CV Pedro Barbosa
Pedro Barbosa Investigador Mestrado em Bioinformática Universidade do Minho
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Education and Training
Master’s degree in Bioinformatics by University of Minho; Braga, Portugal (2013)
Advanced course in Molecular Ecology and Evolution by University of Lund; Lund, Sweden (2011)
Bachelor degree in Applied Biology by University of Minho; Braga, Portugal (2011)
Research and Professional Experience
Nov. 2014 – Current Bioinformatics researcher
CEBAL - Centre of agronomic and Agro-Industrial biotechnology of Alentejo
Genosuber, Cork Oak Genome Sequencing Project
Feb. 2014 – Aug. 2014 Fellowship Researcher
Center of Biological Engineering, Minho University, Portugal
PEM project – Metabolic Engineering Platform
Working with metagenomic sequencing of soil communities to infer new variants of CoA transferase activity in less characterized and unknown organisms.
Current interests of research
Bioinformatics, Metagenomics, Next-Generation-Sequencing, Genome assembly
Selected Publications
Papers in peer reviewed journals
Martin Stervander, Juan Carlos Illera, Laura Kvist, Pedro Barbosa, Naomi P. Keehnen1, Peter Pruisscher, Staffan Bensch, and Bengt Hansson. “Disentangling the Complex Evolutionary History of the Western 2 Palearctic Blue Tits (Cyanistes spp.) – Phylogenomic Analyses 3 Suggest Species Radiation by Multiple Colonisation Events and 4 Subsequent Isolation”. Molecular Ecology (2015)
Posters in Conferences
USIÉ, A., SIMÕES, F., BARBOSA, P., MEIRELES, B., CHAVES, I., ALMEIDA, M.H., MATOS, J., RAMOS, A.M., 2016. Comprehensive analysis of the cork oak (Quercus suber) transcriptome involved in the regulation of bud sprouting and foliar development. 5th Bioinformatics Open Days, Braga, Portugal, 18-19 February
BARBOSA, P., LEÃO, C., USIÉ, A., CHAVES, I., AMARO, A., BOTELHO, A., PINTO, C., STEVENSON, K., INÁCIO, J., RAMOS, A.M., 2016. Genome wide comparison between Mycobacterium avium subsp. paratuberculosis non-pigmented and pigmented isolates. 5th Bioinformatics Open Days, Braga, Portugal, 18-19 February
GASPAR, D., TRINDADE, C., USIÉ, A., BARBOSA, P., FORTES, A., PESQUITA, C., COSTA, R., RAMOS, A.M., 2016. Characterization of the maritime pine (Pinus pinaster) transcriptome in the response to infection with Bursaphelenchus xylophilus, the causal agent of pine wilt disease. 5th Bioinformatics Open Days, Braga, Portugal, 18-19 February
LEÃO, C., BARBOSA, P., USIÉ, A., CHAVES, I., AMARO, A., BOTELHO, A., PINTO, C., INÁCIO, J., STEVENSON, K., RAMOS, A.M., 2016. Molecular characterization of a rare pigmented Mycobacterium avium subsp. paratuberculosis Type C strain. 13th International Colloquium on Paratuberculosis, Nantes, France, 20-24 June
GONÇALVES, S., GENOSUBER CONSORTIUM, 2014. GENOSUBER – Cork Oak (Quercus suber) Genome Sequencing Project. 2nd Plant Genomics Congress. London, UK, 11-12 May.
VARELA, M.C., GENOSUBER CONSORTIUM, 2014. Controlled pollination in cork oak (Quercus suber L.) to support its genome sequencing project 23rd International Congress on Sexual Plant Reproduction, Porto, Portugal, 13-18 July
Oral presentations
RAMOS, A.M., GENOSUBER CONSORTIUM, 2016. The draft assembly and annotation of the cork oak (Quercus suber L.) genome. 5th Bioinformatics Open Days, Braga, Portugal, 18-19 February
RAMOS, A.M., GENOSUBER CONSORTIUM, 2015. The draft assembly and annotation of the cork oak (Quercus suber L.) genome. Fisiologia Vegetal, XXI Meeting of the Spanish Society of Plant Physiology, XIV Iberian Meeting of Plant Physiology, Toledo, Spain, 14-17 June
P. Barbosa, O. Dias, J. P. Arrais and M. Rocha. ““Metagenomic Analysis of the Saliva Microbiome with Merlin". In: 8th International Conference on Practical Applications of Computational Biology & Bioinformatics (PACBB 2014). 2014, pp. 191-199
Thesis
P.Barbosa (2013) “Taxonomic and functional analysis of metagenomes”. MS Thesis. University of Minho. Braga